DICOM Standard Browser

by Innolitics

CR ImageCIOD
PatientMModule - Patient
(0010,0010) Patient's Name2Person Name
(0010,0020) Patient ID2Long String
(0010,0021) Issuer of Patient ID3Long String
(0010,0024) Issuer of Patient ID Qualifiers Sequence3Sequence
(0010,0030) Patient's Birth Date2Date
(0010,0033) Patient's Birth Date in Alternative Calendar3Long String
(0010,0034) Patient's Death Date in Alternative Calendar3Long String
(0010,0035) Patient's Alternative Calendar1CCode String
(0010,0040) Patient's Sex2Code String
(0010,1100) Referenced Patient Photo Sequence3Sequence
(0010,0200) Quality Control Subject3Code String
(0008,1120) Referenced Patient Sequence3Sequence
(0010,0032) Patient's Birth Time3Time
(0010,1002) Other Patient IDs Sequence3Sequence
(0010,1001) Other Patient Names3Person Name
(0010,2160) Ethnic Group3Short String
(0010,4000) Patient Comments3Long Text
(0010,2201) Patient Species Description1CLong String
(0010,2202) Patient Species Code Sequence1CSequence
(0010,2292) Patient Breed Description2CLong String
(0010,2293) Patient Breed Code Sequence2CSequence
(0010,2294) Breed Registration Sequence2CSequence
(0010,0212) Strain Description3Unlimited Characters
(0010,0213) Strain Nomenclature3Long String
(0010,0219) Strain Code Sequence3Sequence
(0010,0218) Strain Additional Information3Unlimited Text
(0010,0216) Strain Stock Sequence3Sequence
(0010,0214) Strain Stock Number1Long String
(0010,0217) Strain Source1Long String
(0010,0215) Strain Source Registry Code Sequence1Sequence
(0010,0221) Genetic Modifications Sequence3Sequence
(0010,2297) Responsible Person2CPerson Name
(0010,2298) Responsible Person Role1CCode String
(0010,2299) Responsible Organization2CLong String
(0012,0062) Patient Identity Removed3Code String
(0012,0063) De-identification Method1CLong String
(0012,0064) De-identification Method Code Sequence1CSequence
(0010,0026) Source Patient Group Identification Sequence3Sequence
(0010,0027) Group of Patients Identification Sequence3Sequence
Clinical Trial SubjectUModule - Patient
General StudyMModule - Study
Patient StudyUModule - Study
Clinical Trial StudyUModule - Study
General SeriesMModule - Series
CR SeriesMModule - Series
Clinical Trial SeriesUModule - Series
General EquipmentMModule - Equipment
General ImageMModule - Image
General ReferenceUModule - Image
Image PixelMModule - Image
Contrast/BolusCModule - Image
Display ShutterUModule - Image
DeviceUModule - Image
SpecimenUModule - Image
CR ImageMModule - Image
Overlay PlaneUModule - Image
Modality LUTUModule - Image
VOI LUTUModule - Image
SOP CommonMModule - Image
Common Instance ReferenceUModule - Image
CT ImageCIOD
MR ImageCIOD
NM ImageCIOD
US ImageCIOD
US Multi-frame ImageCIOD
SC ImageCIOD
Multi-frame Single Bit SC ImageCIOD
Multi-frame Grayscale Byte SC ImageCIOD
Multi-frame Grayscale Word SC ImageCIOD
Multi-frame True Color SC ImageCIOD
X-Ray Angiographic ImageCIOD
XRF ImageCIOD
RT ImageCIOD
RT DoseCIOD
RT Structure SetCIOD
RT PlanCIOD
PET ImageCIOD
Digital X-Ray ImageCIOD
Digital Mammography X-Ray ImageCIOD
Digital Intra-Oral X-Ray ImageCIOD
RT Beams Treatment RecordCIOD
RT Brachy Treatment RecordCIOD
RT Treatment Summary RecordCIOD
VL Endoscopic ImageCIOD
VL Microscopic ImageCIOD
VL Slide-Coordinates Microscopic ImageCIOD
VL Photographic ImageCIOD
Video Endoscopic ImageCIOD
Video Microscopic ImageCIOD
Video Photographic ImageCIOD
VL Whole Slide Microscopy ImageCIOD
Grayscale Softcopy Presentation StateCIOD
Color Softcopy Presentation StateCIOD
Pseudo-Color Softcopy Presentation StateCIOD
Blending Softcopy Presentation StateCIOD
Basic Structured DisplayCIOD
XA/XRF Grayscale Softcopy Presentation StateCIOD
Advanced Blending Presentation StateCIOD
Basic Voice AudioCIOD
12-Lead ECGCIOD
General ECGCIOD
Ambulatory ECGCIOD
HemodynamicCIOD
Basic Cardiac EPCIOD
Arterial Pulse WaveformCIOD
Respiratory WaveformCIOD
General Audio WaveformCIOD
Basic Text SRCIOD
Enhanced SRCIOD
Comprehensive SRCIOD
Key Object Selection DocumentCIOD
Mammography CAD SRCIOD
Chest CAD SRCIOD
Procedure LogCIOD
X-Ray Radiation Dose SRCIOD
Spectacle Prescription ReportCIOD
Colon CAD SRCIOD
Macular Grid Thickness and Volume ReportCIOD
Implantation Plan SR DocumentCIOD
Comprehensive 3D SRCIOD
Radiopharmaceutical Radiation Dose SRCIOD
Extensible SRCIOD
Acquisition Context SRCIOD
Simplified Adult Echo SRCIOD
Patient Radiation Dose Structured ReportCIOD
Enhanced MR ImageCIOD
MR SpectroscopyCIOD
Enhanced MR Color ImageCIOD
Raw DataCIOD
Enhanced CT ImageCIOD
Spatial RegistrationCIOD
Deformable Spatial RegistrationCIOD
Spatial FiducialsCIOD
Ophthalmic Photography 8 Bit ImageCIOD
Ophthalmic Photography 16 Bit ImageCIOD
Stereometric RelationshipCIOD
Hanging ProtocolCIOD
Encapsulated PDFCIOD
Encapsulated CDACIOD
Real World Value MappingCIOD
Enhanced X-Ray Angiographic ImageCIOD
Enhanced X-Ray RF ImageCIOD
RT Ion PlanCIOD
RT Ion Beams Treatment RecordCIOD
SegmentationCIOD
Ophthalmic Tomography ImageCIOD
X-Ray 3D Angiographic ImageCIOD
X-Ray 3D Craniofacial ImageCIOD
Breast Tomosynthesis ImageCIOD
Enhanced PET ImageCIOD
Surface SegmentationCIOD
Color PaletteCIOD
Enhanced US VolumeCIOD
Lensometry MeasurementsCIOD
Autorefraction MeasurementsCIOD
Keratometry MeasurementsCIOD
Subjective Refraction MeasurementsCIOD
Visual Acuity MeasurementsCIOD
Ophthalmic Axial MeasurementsCIOD
Intraocular Lens CalculationsCIOD
Generic Implant TemplateCIOD
Implant Assembly TemplateCIOD
Implant Template GroupCIOD
RT Beams Delivery InstructionCIOD
Ophthalmic Visual Field Static Perimetry MeasurementsCIOD
Intravascular OCT ImageCIOD
Ophthalmic Thickness MapCIOD
Surface Scan MeshCIOD
Surface Scan Point CloudCIOD
Legacy Converted Enhanced CT ImageCIOD
Legacy Converted Enhanced MR ImageCIOD
Legacy Converted Enhanced PET ImageCIOD
Corneal Topography MapCIOD
Breast Projection X-Ray ImageCIOD
Parametric MapCIOD
Wide Field Ophthalmic Photography Stereographic Projection ImageCIOD
Wide Field Ophthalmic Photography 3D Coordinates ImageCIOD
Tractography ResultsCIOD
RT Brachy Application Setup Delivery InstructionCIOD
Planar MPR Volumetric Presentation StateCIOD
Volume Rendering Volumetric Presentation StateCIOD
Content Assessment ResultsCIOD
Table CT Performed Procedure ProtocolCIOD
CT Defined Procedure ProtocolCIOD
Protocol ApprovalCIOD
Ophthalmic Optical Coherence Tomography En Face ImageCIOD
Ophthalmic Optical Coherence Tomography B-scan Volume AnalysisCIOD

Built with by Innolitics, a team of medical imaging software developers.

Data synced with official DICOM standard on 25 September 2017. The DICOM Standard is under continuous maintenance, and the current official version is available at http://dicom.nema.org/. DICOM Parts 3 and 6, © NEMA. Please note that the most recent PDF version of the standard is the official reference, and should checked when making technical decisions.

Strain Source Registry Code Sequence Attribute

Tag(0010,0215)
TypeRequired (1)
KeywordStrainSourceRegistryCodeSequence
Value Multiplicity1
Value RepresentationSequence (SQ)

Identification of the organization that is the registry of sources of animals. See Section C.7.1.1.1.4.

Only a single Item is permitted in this sequence.

Section C.7.1.1.1.4

C.7.1.1.1.4 Patient Strain and Genetic Modifications

The strain of an animal (group of animals that is genetically uniform), if known, may be encoded in Strain Description (0010,0212). The nomenclature used may be encoded in Strain Nomenclature (0010,0213). A precoordinated code identifying the strain may be encoded in Strain Code Sequence (0010,0219).

Defined Terms for Strain Nomenclature (0010,0213) and Genetic Modifications Nomenclature (0010,0223):

MGI_2013

International Committee on Standardized Genetic Nomenclature for Mice, Rat Genome and Nomenclature Committee. MGI-Guidelines for Nomenclature of Mouse and Rat Strains. 2013/10. Available from: http://www.informatics.jax.org/mgihome/nomen/strains.shtml

Note

  • A pair of text and nomenclature Attributes are used, since standard nomenclatures typically define values that are constructed from multiple components, and do not distinguish between value and meaning. These are distinct from the precoordinated codes used in Stain Code Sequence (0010,0219).

  • Some strain and genetic modification nomenclatures make use of superscripts. To encode these superscripts consistently in an unformatted string, the convention of enclosing the superscript text in "<" and ">" pairs may be used. E.g., "D2.B6-Ahrb-1/J" would be encoded as "D2.B6-Ahr<b-1>/J".

  • Relevant information that is not encoded in the formal description of the strain (i.e., not defined in the nomenclature used), such as the number of transgenes, may be encoded as plain text in Strain Additional Information (0010,0218).

The strain of an animal may be more specifically identified by the Attributes within Strain Stock Sequence (0010,0216).

Note

  • The MGI-Guidelines for Nomenclature of Mouse and Rat Strains recommends the use of the laboratory codes assigned by the Institute of Laboratory Animal Research (ILAR). See the International Laboratory Code Registry (ILCR) http://dels.nas.edu/global/ilar/lab-codes.

  • Because allele names are closely tied to gene names/symbols it is necessary to have a unique and permanent code for any allele that is part of a genotype of interest. For mice, MGI is the authoritative source of the nomenclature for genes and alleles and maintains unique, permanent codes for these entities. The MGI provides a report of all precoordinated MGI codes that are assigned to specific strains at ftp://ftp.informatics.jax.org/pub/reports/MGI_Strain.rpt. These may be used in Strain Code Sequence (0010,0219) and Genetic Modifications Code Sequence (0010,0229) with a coding scheme of "MGI".

  • Another source of pre-coordinated codes for strains is the NCI Thesaurus, which includes a snapshot of strains from the International Mouse Strain Resource (IMSR), as children of (C14421, NCIt, "Inbred Mouse Strains"). See http://ncit.nci.nih.gov/ncitbrowser/pages/concept_details.jsf?dictionary=NCI_Thesaurus&code=C14421.

  • For example, a C57BL/6J mouse strain from The Jackson Laboratory might be identified as:

    • Strain Description (0010,0212) = "C57BL/6J"

    • Strain Nomenclature (0010,0213) = "MGI_2013"

    • Strain Code Sequence (0010,0219)

    • >Code Value = "3028467"

    • >Coding Scheme Designator = "MGI"

    • >Code Meaning = "C57BL/6J"

    • Strain Stock Sequence (0010,0216)

    • >Strain Stock Number (0010,0214) = "000664"

    • >Strain Source (0010,0217) = "Jrep"

    • >Strain Source Registry Code Sequence (0010,0215) = (126850, DCM, "ILCR")

  • For example, a FVB/N mouse with a Tg(MMTV-Erbb2*)NDL2-5Mul transgene might be identified as:

    • Strain Description (0010,0212) = "FVB/N-Tg(MMTV-Erbb2*)NDL2-5Mul"

    • Strain Nomenclature (0010,0213) = "MGI_2013"

    • Genetic Modifications Sequence (0010,0221)

    • >Genetic Modifications Description (0010,0222) = "Tg(MMTV-Erbb2*)NDL2-5Mul"

    • >Genetic Modifications Nomenclature (0010,0223) = "MGI_2013"

    • >Genetic Modifications Code Sequence (0010,0229)

    • >>Code Value = "3793949"

    • >>Coding Scheme Designator = "MGI"

    • >>Code Meaning = "Tg(MMTV-Erbb2*)NDL2-5Mul"

    In this example, a precoordinated code for the genetic modification is defined in MGI, but not for the mouse strain.